The effects of density and artificial substrate on intensive shrimp Litopenaeus vannamei nursery production

Recirculating aquaculture systems (RAS) can be installed indoors, allowing year-round production of tropical animals in nearly any climate. A nursery phase is commonly used in Litopenaeus vannamei production since it allows for enhanced biosecurity and better quantification of animals while reducing space requirements. However, it is unclear whether animal density and inclusion of artificial substrate may improve shrimp performance during the nursery phase. In this experiment, we compared shrimp production parameters in two stocking densities with or without the use of an artificial substrate by creating four treatments: low-density LD; 1500 PL/m⁻³, low-density with substrate LDS, high-density HD; 3000 PL/m⁻³), and high-density with substrate (HDS). The LDS and HDS treatments included 0.46-m² of high-density polyethylene 2.5-cm mesh as a substrate, which increased the tank surface area by 21 %. Each treatment was randomly assigned to four 160-l culture tanks, each with a biofilter. The shrimp had an initial weight of 4 mg and were grown for 50 days. The low-density treatments had significantly higher dissolved oxygen (DO) and pH than the high-density treatments (P ≤ 0.001). Specifically, LDS had the highest DO and pH followed by the LD, HD, and HDS treatments, respectively. High-density treatments had significantly higher NO₂-N levels than low-density treatments during week 2 of the experiment when an unusually high concentration of nitrite was observed. FCR was significantly lower in both low-density treatments than in high-density treatments. At harvest, the total biomass (kg m⁻³) was significantly higher in high-density treatments than in low-density treatments (P ≤ 0.001), and the HDS treatment had a significantly greater biomass output than HD. Producers should consider artificial substrate and higher densities during nursery production to maximize shrimp production; however, the effects on water quality should also be taken into account.     

Comparing biofloc,clear-water,and hybrid nursery systems (Part I): Shrimp (Litopenaeus vannamei) production,water quality,and stable isotope dynamics

Indoor, intensive, nursery-based recirculating aquaculture systems (RAS) can provide high-quality juvenile shrimp for indoor or pond-based production systems in a biosecure manner. However, it is unclear what type of RAS is most appropriate for indoor shrimp nurseries. This study compared three types of RAS nurseries: biofloc (BF), clear-water (CW), and hybrid (HY). Each treatment included four, randomly assigned 160 L (0.35-m²) tanks that were stocked with 3000 post-larvae shrimp m⁻³. The post-larvae (PL10) shrimp had an initial average weight of 7 ± 0.0 mg and were grown for 48 days. The BF tanks included external settling chambers as the only filtration mechanism. The CW tanks had settling chambers, foam fractionators, and external biofilters to fully clarify the water and process nitrogenous waste. Hybrid tanks included settling chambers, and external biofilters to maintain some suspended solids along with external biofiltration. Overall, the CW treatment had significantly higher dissolved oxygen (DO) and pH levels than the BF and HY systems. The HY treatment had significantly higher DO than the BF treatment. Nitrite concentration was significantly higher in the HY treatment than the CW treatment. Turbidity in the BF treatment was significantly higher than the other treatments. On the final sample date, the BF treatment had significantly higher nitrite and nitrate concentrations than the other treatments. Differences between treatments in terms of shrimp survival, mean harvest weight, specific growth rate, and feed conversion ratio were not significant. The final weight of the shrimp at 48 days for the BF, CW, and HY were 670 mg, 640 mg, and 590 mg respectively. A stable isotope mixing model indicated that, in the BF treatment, 13% of the C and 34% of the N in harvested shrimp tissue may have originated from biofloc material, signifying some nutrient recycling. The nitrification process was more effective with the inclusion of an external biofilter. All three system types appear suitable for RAS shrimp nursery production although consideration should be given to water quality consistency and filtration costs.     

What the past tells us about the future of Pacific salmon research

The Larkin lectures are held every two years at the University of British Columbia in recognition of Dr. Peter Larkin's contributions to fisheries science. The lecture I presented in November 2015 coincided with an announcement that the Institute of Fisheries that Peter Larkin founded in the 1960s would be restructured as the “Institute for Oceans and Fisheries” with an emphasis on fisheries and oceans issues important to British Columbia as well as the rest of the world. I decided to look back at research issues that Peter Larkin thought would be important for Pacific salmon (Oncorhynchus spp.) in the future and see what has happened as a way of identifying the complexity that the Institute for Oceans and Fisheries in particular and the science community in general will face. I chose five themes from Peter Larkin's talks: 1 understanding marine survival, 2 ocean carrying capacity, 3 aquaculture, 4 climate, Pacific salmon and climate change and 5 informing the public, and then added my opinion about research priorities for the future. Peter Larkin recognized the future relevance of these examples, but he probably could not have imagined how these and related issues will challenge his renamed institute and the rest of the research community over the next 50 years.     

采用卷积神经网络构建西北太平洋柔鱼渔场预报模型

对远洋渔场资源和位置进行预报可以为远洋渔业生产及管理提供重要信息。该研究针对西北太平洋柔鱼渔场，利用海洋表面温度遥感信息和中国远洋渔船生产资料，基于深度学习原理，选取卷积神经网络构建西北太平洋柔鱼渔场预报模型。根据不同月份、不同通道构建了多种数据集，用于训练渔场预报模型。训练结果表明，4个通道组合的数据集的训练结果最优，渔汛早期（7-8月）、中期（9月）和后期（10-11月）测试样本的准确率分别为80.5%、81.5%和81.4%。以2015年的真实渔场数据对模型进行验证，模型的平均召回率为82.3%，平均精确率为66.6%，F1得分平均值为73.1%，预测的高产渔区与实际作业的高单位捕捞努力量渔获量区基本匹配。该研究构建的渔场预报模型可以获得较好的准确率，可为其他鱼种的渔场预报模型构建提供新的思路。     

凡纳滨对虾商业苗种抗WSSV性能比较

白斑综合征病毒(WSSV)一直是甲壳类生物的高致病性病原。为了解市场上不同凡纳滨对虾(Litopenaeus vannamei)商业苗种病原携带情况及其抗WSSV性能,本研究收集了6个品牌的凡纳滨对虾商业苗种(分别简称为海南Z、海南S、广州P、广州Z、黄骅R和东营M),先进行包括WSSV在内的8种病原的检测,然后,采用单尾定量口饲感染方式进行抗WSSV性能测试,并比较各组苗种感染WSSV后的平均存活时间、存活率以及累积死亡率的差异。结果显示,6个商业苗种都不携带WSSV,部分苗种检测有潜在虾肝肠胞虫(EHP)和偷死野田村病毒(CMNV)。各苗种感染WSSV后,平均存活时间从长到短依次为海南Z、广州P、黄骅R、海南S、广州Z、东营M。东营M感染WSSV后第4天达到死亡高峰,而海南Z在第6~7天到达死亡高峰,比东营M晚了2~3d。感染实验结束后,海南Z和广州P存活率最高,同为72.5%,而东营M和黄骅R的存活率最低。本研究表明,海南Z和广州P抗WSSV性能最强,研究结果可为凡纳滨对虾抗病新品种的选育提供基础数据。     

Analysis of sinking death using video images of the swimming performance of Pacific Bluefin tuna (Thunnus orientalis) larvae

In this study, we aimed to clarify the mechanism of sinking death during the larval stage of Pacific Bluefin tuna Thunnus orientalis by investigating the effects of swimming performance on sinking death, using a behavioral approach. Swimming performance was examined 3–9 days after hatching (DAH) under day and night light conditions in cuboid experimental tanks. Swimming behavior variables such as swimming speed and swimming angle were measured under both light conditions. Larvae in the daytime experiment and larvae with inflated swim bladders at night were distributed on the surface layer of the water column. In contrast, larvae with uninflated swim bladders at night were frequently observed swimming vertically or sinking to the bottom of the tank. Larvae with inflated swim bladders at night were always distributed beneath the surface until the next morning (survival rates were 100 %). However, larvae with uninflated swim bladders at night swam upward repeatedly and later sank to the bottom of the tank (survival rates were 60 % and 38 % at 5 and 9 DAH, respectively). Larvae with uninflated swim bladders were not always able to maintain their swimming depth by swimming until the next morning. Additionally, their swimming speed and vertical swimming frequency (ratio) depended on the illumination and swim bladder conditions. Our findings show that larvae with uninflated swim bladders at night were associated with a higher risk of sinking death. The swimming energy capacity of Pacific Bluefin tuna larvae, which indicates the total amount of the energy that enables individuals to swim throughout the night without feeding, was found to be linked to sinking death.     

Effect of disinfection with peracetic acid on the microbial community of a seawater aquaculture recirculation system for Pacific white shrimp (Litopenaeus vannamei)

When tropical shrimps are kept in recirculating aquaculture systems (RAS), one of the limiting factors is the maintenance of a sufficient water quality, and therefore, often disinfectants like peracetic acid (PAA) are added to the water either as prophylactic or treatment measure. In this study, PAA in concentrations of 0.1 mg/L, 1 mg/L and 10 mg/L was applied continuously for 56 days to small-scale seawater RAS stocked with Litopenaeus vannamei. Treatment with 0.1 mg/L did not result in a reduction in the total bacterial amount and therefore was not effective. A concentration of 10 mg/L led to significant changes in the chemical water parameters already after 2 days and was therefore not recommendable. A concentration of 1 mg/L led to increased levels of ammonia and nitrite within 2 days and to a significant increase in the bacterial amount in the water, most probably due to an enhanced growth of heterotrophic bacteria. The microflora showed significant fluctuations, and there were indications that the welfare of the shrimps was affected. Using 1 mg PAA/L for prophylactic use is therefore also not recommendable but might be an alternative option for short-term treatment in cases of disease outbreaks.     

Diazotroph community structure and abundance in wheat–fallow and wheat–pea crop rotations

Biological input of nitrogen (N) from the atmosphere by free-living diazotrophs can help alleviate fertilizer use in agricultural systems. In this study, we investigated the effect of N fertilizer and winter pea (Pisum sativum L.) crop on the community structure and abundance of free-living diazotrophs in a two year study of dryland winter wheat (Triticum aestivum L.) no-till production system in Eastern Oregon, USA. Based on quantification of the nifH gene, diazotroph abundance was strongly influenced by plant species and the crop year in which the soil samples were collected. A greater amount of nifH copies was recovered in 2012 compared to 2011 either as copies per gram soil or normalized to the abundance of bacterial 16S rRNA genes. The quantity of genes was greater under pea than wheat in 2012 although no difference was observed in the preceding year. The nifH gene abundance was positively correlated to ammonium concentration in 2011 and bacterial abundance in 2012. Nitrogen application did not influence diazotroph abundance in the top 0–5 cm; however the abundance was reduced by application at the lower 5–10 cm depth under wheat crop. The diazotroph community structure appeared to be influenced more by N fertilization rather than plant species with the exception of wheat in 2012. Changes in the community structure over the two years were greater for fertilized than unfertilized soil. Collectively, these data suggest that year-to-year variability had a greater influence on diazotroph communities rather than specific parameters of plant species, fertilization, total N, total organic C, or soil pH. Multi-year studies are necessary to define the specific drivers of diazotroph abundance, community structure and function.     

Short-term response of salal (Gaultheria shallon Pursh) to commercial harvesting for floral greenery

Salal (Gaultheria shallon Pursh), which is widely used for floral greenery, is an important non-timber forest product (NTFP) from the coastal forests of the Pacific Northwest of North America. However, there are no known studies on the impacts of commercial salal harvesting on subsequent growth. A study was therefore initiated to quantify the growth of salal 1 year after commercial harvesting, and to compare this with growth of unharvested salal. The amount of biomass removed from shrubs through commercial harvesting (131 g m⁻²) was the same as the amount of annual growth in adjacent undisturbed plots (135 g m⁻²). One year later, the amount of regrowth in previously harvested plots (144 g m⁻²) was greater than the amount of new growth in adjacent undisturbed plots (111 g m⁻²). As there was little difference in the weight per current stem, the increased biomass after commercial harvesting was attributed to the observed increase in stem number (60 stems m⁻²) as compared to undisturbed salal (50 stems m⁻²). Our study does not incorporate either repeated annual harvesting or variable harvesting intensities, both of which have been anecdotally reported to affect levels of re-growth and therefore sustainability.     

Annualized diameter and height growth equations for Pacific Northwest plantation-grown Douglas-fir, western hemlock, and red alder

Simulating the influence of intensive management and annual weather fluctuations on tree growth requires a shorter time step than currently employed by most regional growth models. High-quality data sets are available for several plantation species in the Pacific Northwest region of the United States, but the growth periods ranged from 2 to 12 years in length. Measurement periods of varying length complicate efforts to fit growth models because observed growth rates must be interpolated to a common length growth period or those growth periods longer or shorter than the desired model time step must be discarded. A variation of the iterative technique suggested by Cao [Cao, Q.V., 2000. Prediction of annual diameter growth and survival for individual trees from periodic measurements. Forest Sci. 46, 127–131] was applied to estimate annualized diameter and height growth equations for pure plantations of Douglas-fir, western hemlock, and red alder. Using this technique, fits were significantly improved for all three species by embedding a multi-level nonlinear mixed-effects framework (likelihood ratio test: p < 0.0001). The final models were consistent with expected biological behavior of diameter and height growth over tree, stand, and site variables. The random effects showed some correlation with key physiographic variables such as slope and aspect for Douglas-fir and red alder, but these relationships were not observed for western hemlock. Further, the random effects were more correlated with physiographic variables than actual climate or soils information. Long-term simulations (12–16 years) on an independent dataset using these annualized equations showed that the multi-level mixed effects models were more accurate and precise than those fitted without random effects as mean square error (MSE) was reduced by 13 and 21% for diameter and height growth prediction, respectively. The level of prediction error was also smaller than an existing similar growth model with a longer time step (ORGANON v8) as the annualized equations reduced MSE by 17 and 38% for diameter and height growth prediction, respectively. These models will prove to be quite useful for understanding the interaction of weather and silviculture in the Pacific Northwest and refining the precision of future growth model projections.